• J-H Wu, W-Y, Chen, H-C Kuo, and Y-M, Li (2019) Reduction-oxidation fluctuations shape the soil microbiome in the hypoxic bioremediation of octochlorinated dibenzodioxin and dibenzofuran contaminated soil. Environmental Research (accepted@2019/02/18)


  • Weina Yu, Jer-HorngWu, Jinjie Zhang, Wen Yang, Jiong Chen and Jinbo Xiong (2018) A meta-analysis reveals universal gut bacterial signatures for diagnosing the incidence of shrimp disease. FEMS Microbiology Ecology, 94(10):1-10. (doi: 10.1093/femsec/fiy147).


  • W-Y Chen, L Kraková, J-H Wu*, D Pangallo, L Jeszeová, B Liu, H Yasui (2017) Community and proteomic analyses of anaerobic consortia converting tetramethylammonium to methane. Archaea. [SCI 2.132, Q3 of Microbiology]
  • W-Y Chen, Tze Hann Ng, Jer-Horng Wu*, Jiung-Wen Chen, Han-Ching Wang (2017) Microbiome Dynamics in a Shrimp Grow-out Pond with Possible Outbreak of Acute Hepatopancreatic Necrosis Disease. Scientific Reports, 7: 9395 (DOI:10.1038/s41598-017-09923-6). [SCI 4.259, Q1 (10/64) of Multidisciplinary Sciences]
  • Yuta Sugimoto, Satoru Suzuki*, Lisa Nonaka, Chanchai Boonla, Nop Sukpanyatham, Hsin-Yiu Chou, Jer-Horng Wu. (2017) The novel mef(C)-mph(G) macrolide resistance genes are conveyed in the environment on various vectors. Journal of Global Antimicrobial Resistance. 10:47-53. [SCI 1.276, Q4 of Pharmacology & Pharmacy]


  • Bing Liu, Kohei Yoshinaga, Jer-Horng Wu, Wei-Yu Chen, Mitsuharu Terashima, Rajeev Goel, Domenico Pangallo, Hidenari Yasui (2016) Kinetic analysis of anaerobic biological degradation of tetramethylammonium hydroxide (TMAH) in the suspended sludge system at ambient temperature. Biochemical Engineering Journal. 114:42-49. [SCI 2.46, Q2 of Biotechnology & Applied Microbiology]
  • Wei-Yu Chen, Jer-Horng Wu*, Shih-Chiang Lin, Juu-En Chang (2016) Bioremediation of polychlorinated-p-dioxins/dibenzofurans contaminated soil using simulated compost-amended landfill reactors under hypoxic conditions.Journal of Hazardous Materials. 312:159-168. [SCI 6.065, Q1 (17/205) of Environmental Science and Engineering category ]


  • Chen W-Y, Wu J-H*, Chang J-E. (2014) Pyrosequencing analysis reveals high population dynamics of soil microcosm degrading octachlorodibenzofuran. Microbes and Environments. 29-4:293-400. [SCI 2.231]
  • Huang H-J, Chen W-Y, Wu J-H* (2014) Total Protein Extraction for Metaproteomics Analysis of Methane Producing Biofilm: The Effects of Detergents. International Journal of Molecular Sciences. 15:10169-10184. [SCI 2.464]
  • Chuang H.-P., Wu J.-H.*, Ohashi A., Abe K., Hatamoto M. (2014) Potential of nitrous oxide conversion in batch and down-flow hanging sponge bioreactor systems. Sustainable Environment Research. 24(2): 117-128. (中華民國環境工程學會104年度學術論文獎及高肇籓教授紀念論文獎)


  • Wu J-H*, Chuang H-P, Hsu M-H, and Chen W-Y (2013) Use of a hierarchical oligonucleotide primer extension approach for multiplexed relative abundance analysis of methanogens in anaerobic digestion systems. Applied and Environmental Microbiology 79(24):7598-7609.(doi: 10.1128/AEM.02450-13.) [SCI 3.678, #1 cited journal in Microbiology and Biotechnology & Applied Microbiology categories]
  • Chen W-Y, Wu J-H*, Lin Y-Y, Huang H-J, Chang J-E (2013) Bioremediation potential of soil contaminated with highly substitutedpolychlorinated dibenzo-p-dioxins and dibenzofurans: Microcosm study and microbial community analysis. Journal of Hazardous Materials, 261: 351-361. [SCI 4.331]
  • Wu J-H*, Wu, F-Y, Chuang H-P, Chen W-Y, Huang H-J, Chen S-H, Liu W-T (2013) Community and proteomic analysis of methanogenic consortia degrading terephthalate. Applied and Environmental Microbiology. 79:105-112. [SCI 3.678, #1 cited journal in Microbiology and Biotechnology & Applied Microbiology categories]


  • Wu J.-H.*, Hsu M.- H., Hung C.-H., Tesng I-C., Lin T.-F. (2010) Development of a hierarchical oligonucleotide primer extension assay for the qualitative and quantitative analysis of Cylindrospermopsis raciborskii subspecies in freshwater. Microbes & Environments. 25:2. [SCI 2.444]
  • Chang C-Y., Tung H-H., Tseng I-T., Wu J-H., Liu Y-F., and Lin H-M (2010) Dynamics of methanotrophic communities in tropical alkaline landfill upland soil. Applied Soil Ecology. 46:192-199. [SCI 2.106]


  • Wu J-H*, Hong P.-Y. and Liu W.-T. (2009) Quantitative effects of position and type of single mismatch on single-base primer extension. Journal of Microbiological Methods. 77:267-275. [SCI 2.161]
  • Chen C.-L., Wu J.-H., Tseng I-C., Liang T.-M., Liu W.-T. (2009) Characterization of active microbes in a full-scale anaerobic fluidized bed reactor treating phenolic wastewater. Microbes & Environments 24: 144-153. [SCI 2.444]
  • Narihiro T., Terada T., Ohashi A., Wu J-H, Liu W-T, Araki N., Kamagata Y., Nakamura K., and Sekiguchi Y, (2009) Quantitative detection of culturable methanogenic archaea abundance in anaerobic treatment systems using the sequence-specific rRNA cleavage method. ISME Journal. 3:522-535. [SCI 8.951, #4/136 in Ecology]
  • Hong, P. Y., Wu, J. H., Liu, W. T. (2009) A high-throughput and quantitative hierarchical oligonucleotide primer extension (HOPE)-based approach to identify sources of faecal contamination in water bodies. Environmental Microbiology. 11:1672-1681. [SCI 5.756, #14/116 in Microbiology]


  • Hong P-Y, Wu J-H and Liu W-T (2008) Relative abundance of Bacteroides spp. in stools and wastewaters as determined by hierarchical oligonucleotide primer extension (HOPE). Applied and Environmental Microbiology 74:2881-2893. [SCI 3.678, #1 cited journal in Microbiology and Biotechnology & Applied Microbiology categories]
  • Chen C.-L., Wu J.-H. and Liu W-T (2008) Identification of important microbial populations in the mesophilic and thermophilic phenol-degrading methanogenic consortia. Water Research 42:1963-1976. [SCI 4.655]


  • Wu J-H and Liu W-T (2007) Quantitative multiplexing analysis of PCR amplified ribosomal RNA genes by hierarchical oligonucleotide primer extension reaction. Nucleic Acids Res . 35:e82. [SCI 8.278]
  • Starke E. M., Smoot J. C., Wu J.-H., Liu W.-T., Chandler D., Stahl D. A. (2007) Saliva-based diagnostics using 16S rRNA microarrays and microfluidics. Annals of the New York Academy of Sciences. 1098 (1), 345-361. [SCI 4.364]
  • Liu, W.-T. Guo, H. and Wu J.-H. (2007) Effects of target length on the hybridization efficiency and specificity of ribosomal RNA-based oligonucleotide microarrays. Appl. Environ. Microbiol. 73:73-82. [SCI 3.678]


  • Liu W-T, Wu J-H, Li Emily S-Y, and Selamat E S. (2005) Emission characteristics of fluorescent labels with respect to temperature changes and subsequent effects on DNA microchip studies. Appl. Environ. Microbiol. 71:6453-6457. [SCI 3.678]


  • Li S. Y. Emily, Ng K. K. Johnson, Wu J.-H. and Liu W.-T. (2004) Evaluating single-base-pair discriminating capability of planar oligonucleotide microchips using a non-equilibrium dissociation approach. Environ. Microbiol. 6:1197-1202. [SCI 5.756]


  • Wu, J.-H., Liu, W. T., Tseng, I. C., and Cheng, S. S. (2001) Characterization of 4-methylbenzoate-degrading methanogenic consortium as determined by the small-subunit rDNA sequence analysis. J. Biosci. Bioeng. 91(5): 449-455. [SCI 1.737]
  • Liu, W. T., Nielsen, A. T., Wu, J.-H., Tsai, C. S., Matsuo, Y. and Molin, S. (2001) In situ identification of polyphosphate- and polyhydroxyalkanoate-accumulating traits for microbial populations in a biological phosphorous removal process. Environ. Microbiol. 3:110-122. [SCI 5.756]
  • Wu, J.-H., Liu, W. T., Tseng, I. C., and Cheng, S. S. (2001) Characterization of microbial consortia in a terephthalate-degrading anaerobic granular sludge system. Microbiology-SGM, 147:373-382. [SCI 2.852]



  • 陳薇羽、吳哲宏、陳宏達、陳琪璜、涂茂園 (2017) 以次世代高通量定序技術探討不同氧化劑對油污染土壤菌群結構之影響,石油季刊,第53卷第1期,p.101- p.113。


  • 陳薇羽、吳哲宏、曾怡禎 (2011) 穩定同位素標定法應用於分析污染地層生物整治之關鍵菌群結構,環境工程會刊,第22卷第1期。